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Update to use new openff rdkit parameterization#5

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simonbray wants to merge 1 commit intoxchem:masterfrom
simonbray:update-deps
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Update to use new openff rdkit parameterization#5
simonbray wants to merge 1 commit intoxchem:masterfrom
simonbray:update-deps

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@simonbray
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When the code was written, rdkit integration was only available in the swang fork of openmm. Now this has been upstreamed, the standard openforcefield package can be used.

I haven't updated the environment.yaml file, but this could also be done at some point.

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lgtm-com Bot commented Mar 31, 2020

This pull request introduces 1 alert when merging 60067bb into e98d406 - view on LGTM.com

new alerts:

  • 1 for Unused import

simonbray pushed a commit to simonbray/duck that referenced this pull request Jan 4, 2023
AlvaroSmorras added a commit to simonbray/duck that referenced this pull request Jan 28, 2023
added sdf output for duck_report, taken from prepared ligand.pdb
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